3D Gene Expression

Expression Atlases
Search PointClouds
Browse PointClouds
Data Releases

Overview:
   Summary
   Project Goals

Methods:
   Staining & Mounting
   Probe Constructs
   Staging
   Imaging

Software:
   PointCloudXplore
   PointCloudToolBox
   PointCloudAlign
   NODE

File Formats:
   PointCloud (.pce)
   VirtualEmbryo (.vpc)
   Correspondence files

 Software Download:
   PointCloudXplore
       Mac Version
       Windows Version
       Linux Version
       Source Code
      Old Versions
 User Guide:
   Manual

PointCloudXplore

Developed at the Institute for Data Analysis and Visualization (IDAV), in collaboration with the BDTNP, PointCloudXplore is a visualization tool for the PointCloud and Virtual Embryo data sets (Rubel et al, 2006). It was developed to help biologists understand the relationship between gene expression patterns in three dimensions.

To support analysis of these high dimensional data sets, PointCloudXplore integrates multiple views to ease analysis of complex gene expression data. Each view emphasizes different data properties, and interaction between the views makes it possible to perform detailed analyses of the presented data. This type of interaction blends high-dimensional information exploration with interactive, 3D visualization.