Package nix.affy.roc

For manipulating the BAC dmel spike in data and generating ROC curves.

See:
Description

Class Summary

Bin	Score collector for Sgr apps.
ExtractNonOverlappingWindows	Parses out non overlapping RocWindows.
ExtractScoresForRoc	Assignes values from an sgr file to a collection of RocWindows.
ParsePatternedWindows	Finds RocWindows upstream and withing the neighborhood of the ATG start site of a patterned gene list.
ParseSgrsForParticularRegions	Returns oligo values that overlap particular regions.
Positive	Container for a positive BAC used by the Sgr scripts.
PWMScoreWindows	Scores windows for hits to a transcription factor PWM, for RocWindow filtering.
RocWindow	For holding information about a region for ROC analysis.
Sgr	Sgr line container.
SgrBacCounter	Application for scoring '.sgr' files for positives and negatives in relation to the BAC spike in data.

Package nix.affy.roc Description

For manipulating the BAC dmel spike in data and generating ROC curves.